OBO Foundry dashboard analysis

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/usr/local/lib/python3.8/dist-packages/pandas/core/arrays/categorical.py:2630: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Removing unused categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    175
OWL/XML Syntax      4
RDF/XML             3
Name: syntax, dtype: int64

Breakdown of used Axiom Types

	count	mean	std	min	25%	50%	75%	max
AnnotationAssertion	182	149839.730769	800581.259288	1.0	1426.75	7093.0	31093.25	9810543.0
Declaration	182	28694.434066	186557.735900	3.0	437.00	1211.0	5196.25	2401853.0
SubClassOf	177	38555.895604	212888.311341	0.0	341.75	1392.5	6704.75	2401824.0
EquivalentClasses	126	2711.989011	13632.020188	0.0	0.00	26.0	216.50	126427.0
TransitiveObjectProperty	115	6.664835	11.650660	0.0	0.00	2.0	6.00	69.0
SubAnnotationPropertyOf	115	8.763736	18.081284	0.0	0.00	2.0	7.00	119.0
SubObjectPropertyOf	104	44.170330	99.190862	0.0	0.00	2.0	47.00	669.0
DisjointClasses	95	30.604396	91.536229	0.0	0.00	1.0	21.00	625.0
ObjectPropertyRange	86	15.038462	27.584399	0.0	0.00	0.0	19.00	142.0
ObjectPropertyDomain	86	15.406593	28.469807	0.0	0.00	0.0	18.75	147.0
InverseObjectProperties	82	9.736264	18.244706	0.0	0.00	0.0	13.75	109.0
SubPropertyChainOf	67	10.697802	27.641387	0.0	0.00	0.0	2.00	149.0
ClassAssertion	63	80.181319	475.994794	0.0	0.00	0.0	18.00	5528.0
FunctionalObjectProperty	49	0.846154	1.726767	0.0	0.00	0.0	1.00	9.0
SymmetricObjectProperty	47	1.670330	8.387118	0.0	0.00	0.0	1.00	79.0
DataPropertyRange	43	1.104396	3.147407	0.0	0.00	0.0	0.00	30.0
IrrefexiveObjectProperty	38	0.620879	2.323125	0.0	0.00	0.0	0.00	26.0
DataPropertyDomain	37	1.038462	3.162916	0.0	0.00	0.0	0.00	32.0
DifferentIndividuals	34	0.675824	4.199364	0.0	0.00	0.0	0.00	56.0
AnnotationPropertyRangeOf	33	1.456044	10.340915	0.0	0.00	0.0	0.00	133.0
SubDataPropertyOf	29	0.846154	3.601482	0.0	0.00	0.0	0.00	33.0
EquivalentObjectProperties	29	1.554945	5.694308	0.0	0.00	0.0	0.00	36.0
FunctionalDataProperty	23	0.483516	1.533152	0.0	0.00	0.0	0.00	11.0
AsymmetricObjectProperty	22	0.521978	2.522180	0.0	0.00	0.0	0.00	26.0
Rule	21	1.829670	5.957362	0.0	0.00	0.0	0.00	29.0
InverseFunctionalObjectProperty	21	0.175824	0.567896	0.0	0.00	0.0	0.00	4.0
DisjointObjectProperties	17	0.236264	1.129320	0.0	0.00	0.0	0.00	10.0
ObjectPropertyAssertion	14	12.489011	102.394413	0.0	0.00	0.0	0.00	1027.0
ReflexiveObjectProperty	11	0.109890	0.503042	0.0	0.00	0.0	0.00	4.0
AnnotationPropertyDomain	10	0.269231	1.624753	0.0	0.00	0.0	0.00	17.0
DisjointUnion	7	0.087912	0.559170	0.0	0.00	0.0	0.00	5.0
DataPropertyAssertion	5	0.181319	1.609736	0.0	0.00	0.0	0.00	20.0
DatatypeDefinition	2	0.109890	1.409914	0.0	0.00	0.0	0.00	19.0
SameIndividual	1	0.005495	0.074125	0.0	0.00	0.0	0.00	1.0

Breakdown of used OWL Class Expression constructs

	count	mean	std	min	25%	50%	75%	max
Class	181	118113.500000	626761.637159	0.0	1371.00	5404.5	20043.75	7205474.0
ObjectSomeValuesFrom	162	17311.967033	87435.155216	0.0	41.25	469.5	2892.75	853209.0
ObjectIntersectionOf	122	4191.478022	20305.100510	0.0	0.00	32.5	458.25	201964.0
ObjectUnionOf	88	27.939560	89.615641	0.0	0.00	0.0	16.75	767.0
ObjectAllValuesFrom	74	29.516484	148.130588	0.0	0.00	0.0	11.75	1764.0
ObjectComplementOf	66	14.219780	83.066678	0.0	0.00	0.0	2.00	1060.0
ObjectMinCardinality	61	2.538462	8.407189	0.0	0.00	0.0	1.00	57.0
ObjectExactCardinality	49	9.796703	88.945370	0.0	0.00	0.0	1.00	1193.0
ObjectOneOf	44	5.175824	34.581825	0.0	0.00	0.0	0.00	273.0
DataMinCardinality	25	0.241758	0.686744	0.0	0.00	0.0	0.00	4.0
DataSomeValuesFrom	23	7.010989	64.630013	0.0	0.00	0.0	0.00	859.0
DataExactCardinality	23	0.554945	1.653642	0.0	0.00	0.0	0.00	7.0
ObjectHasValue	20	144.120879	1586.405314	0.0	0.00	0.0	0.00	21288.0
ObjectMaxCardinality	20	0.862637	4.761474	0.0	0.00	0.0	0.00	45.0
DataHasValue	18	121.043956	1577.814139	0.0	0.00	0.0	0.00	21288.0
ObjectHasSelf	17	0.230769	0.952773	0.0	0.00	0.0	0.00	6.0
DataAllValuesFrom	3	0.104396	1.032661	0.0	0.00	0.0	0.00	13.0
DataMaxCardinality	2	0.010989	0.104539	0.0	0.00	0.0	0.00	1.0

OBO Score (Experimental)

	ontology	score	score_dash	score_impact
149	ro	0.799	0.862	0.736
63	go	0.676	0.847	0.505
144	pr	0.581	0.926	0.236
165	uberon	0.540	0.706	0.374
34	doid	0.532	0.939	0.126
68	hp	0.503	0.885	0.121
172	wbls	0.500	0.989	0.011
13	chebi	0.499	0.586	0.412
139	plana	0.485	0.966	0.005
62	gno	0.477	0.949	0.005
39	eco	0.474	0.943	0.005
96	mp	0.469	0.894	0.044
35	dpo	0.468	0.936	0.000
57	fypo	0.468	0.936	0.000
159	symp	0.466	0.888	0.044
16	chmo	0.459	0.868	0.049
51	fbdv	0.452	0.887	0.016
173	wbphenotype	0.451	0.891	0.011
125	ontoavida	0.450	0.899	0.000
122	omrse	0.448	0.803	0.093
133	pcl	0.445	0.890	0.000
99	mro	0.445	0.889	0.000
12	cdno	0.445	0.890	0.000
41	ecto	0.438	0.860	0.016
179	zfa	0.435	0.848	0.022
1	aism	0.428	0.841	0.016
40	ecocore	0.424	0.838	0.011
10	caro	0.422	0.620	0.225
161	to	0.416	0.827	0.005
4	apollo_sv	0.401	0.709	0.093
148	rbo	0.401	0.797	0.005
94	mondo	0.391	0.744	0.038
60	geno	0.382	0.752	0.011
82	maxo	0.377	0.737	0.016
86	mfoem	0.375	0.745	0.005
171	wbbt	0.374	0.738	0.011
152	sbo	0.374	0.748	0.000
36	dron	0.373	0.664	0.082
76	ino	0.373	0.730	0.016
169	vt	0.373	0.730	0.016
50	fbcv	0.370	0.718	0.022
129	opmi	0.368	0.703	0.033
3	apo	0.368	0.736	0.000
103	ncit	0.354	0.588	0.121
121	omp	0.353	0.684	0.022
49	fbbt	0.343	0.670	0.016
21	clo	0.328	0.590	0.066
168	vo	0.324	0.571	0.077
100	ms	0.311	0.611	0.011
5	aro	0.302	0.582	0.022
17	cido	0.299	0.594	0.005
88	mi	0.000	0.000	0.016
119	omit	0.000	0.000	0.022
124	ons	0.000	0.000	0.016
24	cob	0.000	0.000	0.016
87	mfomd	0.000	0.000	0.016
37	duo	0.000	0.000	0.016
45	eupath	0.000	0.000	0.016
128	opl	0.000	0.000	0.016
64	gsso	0.000	0.000	0.016
111	obib	0.000	0.000	0.016
65	hancestro	0.000	0.000	0.016
47	fao	0.000	0.000	0.016
174	xao	0.000	0.000	0.016
137	peco	0.000	0.000	0.033
46	exo	0.000	0.000	0.022
166	uo	0.000	0.000	0.165
141	po	0.000	0.000	0.099
8	bspo	0.000	0.000	0.104
101	nbo	0.000	0.000	0.110
134	pco	0.000	0.000	0.110
75	ido	0.000	0.000	0.121
155	so	0.000	0.000	0.165
43	envo	0.000	0.000	0.176
55	foodon	0.000	0.000	0.082
113	ogms	0.000	0.000	0.242
19	cl	0.000	0.000	0.286
102	ncbitaxon	0.000	0.000	0.390
110	obi	0.000	0.000	0.423
132	pato	0.000	0.000	0.462
7	bfo	0.000	0.000	0.786
106	oae	0.000	0.000	0.088
157	stato	0.000	0.000	0.082
95	mop	0.000	0.000	0.022
74	ico	0.000	0.000	0.027
135	pdro	0.000	0.000	0.022
108	oba	0.000	0.000	0.022
109	obcs	0.000	0.000	0.022
162	trans	0.000	0.000	0.027
9	bto	0.000	0.000	0.027
69	hsapdv	0.000	0.000	0.027
167	upheno	0.000	0.000	0.033
23	cmo	0.000	0.000	0.044
127	oostt	0.000	0.000	0.011
59	genepio	0.000	0.000	0.033
84	mf	0.000	0.000	0.033
97	mpath	0.000	0.000	0.038
61	geo	0.000	0.000	0.044
112	ogg	0.000	0.000	0.044
91	mmo	0.000	0.000	0.011
104	ncro	0.000	0.000	0.011
181	zp	0.000	0.000	0.011
67	hom	0.000	0.000	0.000
143	ppo	0.000	0.000	0.000
71	htn	0.000	0.000	0.000
54	fobi	0.000	0.000	0.000
20	clao	0.000	0.000	0.000
131	ovae	0.000	0.000	0.000
77	kisao	0.000	0.000	0.000
38	ecao	0.000	0.000	0.000
145	psdo	0.000	0.000	0.000
89	miapa	0.000	0.000	0.000
72	iao	0.000	0.000	0.000
81	mamo	0.000	0.000	0.000
33	disdriv	0.000	0.000	0.000
136	pdumdv	0.000	0.000	0.000
170	vto	0.000	0.000	0.000
18	cio	0.000	0.000	0.000
118	olatdv	0.000	0.000	0.000
163	tto	0.000	0.000	0.000
176	xlmod	0.000	0.000	0.000
48	fbbi	0.000	0.000	0.000
27	cteno	0.000	0.000	0.000
28	cto	0.000	0.000	0.000
126	ontoneo	0.000	0.000	0.000
114	ogsf	0.000	0.000	0.000
44	epio	0.000	0.000	0.000
153	scdo	0.000	0.000	0.000
2	amphx	0.000	0.000	0.000
66	hao	0.000	0.000	0.000
115	ohd	0.000	0.000	0.000
85	mfmo	0.000	0.000	0.000
142	poro	0.000	0.000	0.000
22	clyh	0.000	0.000	0.000
105	nomen	0.000	0.000	0.000
14	cheminf	0.000	0.000	0.000
107	oarcs	0.000	0.000	0.000
80	ma	0.000	0.000	0.000
56	fovt	0.000	0.000	0.000
70	hso	0.000	0.000	0.000
73	iceo	0.000	0.000	0.000
15	chiro	0.000	0.000	0.000
175	xco	0.000	0.000	0.011
83	mco	0.000	0.000	0.000
31	ddpheno	0.000	0.000	0.005
150	rs	0.000	0.000	0.005
0	agro	0.000	0.000	0.005
116	ohmi	0.000	0.000	0.005
154	sepio	0.000	0.000	0.005
11	cdao	0.000	0.000	0.005
98	mpio	0.000	0.000	0.005
180	zfs	0.000	0.000	0.005
6	bco	0.000	0.000	0.005
147	pw	0.000	0.000	0.011
30	ddanat	0.000	0.000	0.011
52	fideo	0.000	0.000	0.000
29	cvdo	0.000	0.000	0.011
138	phipo	0.000	0.000	0.011
93	mod	0.000	0.000	0.011
32	dideo	0.000	0.000	0.011
160	taxrank	0.000	0.000	0.011
90	micro	0.000	0.000	0.005
177	xpo	0.000	0.000	0.005
42	emapa	0.000	0.000	0.005
78	labo	0.000	0.000	0.000
25	colao	0.000	0.000	0.000
117	ohpi	0.000	0.000	0.000
92	mmusdv	0.000	0.000	0.000
156	spd	0.000	0.000	0.000
26	cro	0.000	0.000	0.000
164	txpo	0.000	0.000	0.000
146	pso	0.000	0.000	0.000
123	one	0.000	0.000	0.000
53	flopo	0.000	0.000	0.005
79	lepao	0.000	0.000	0.000
130	ornaseq	0.000	0.000	0.000
178	zeco	0.000	0.000	0.000
58	gecko	0.000	0.000	0.000
158	swo	0.000	0.000	0.005
151	rxno	0.000	0.000	0.005
140	planp	0.000	0.000	0.005
120	omo	0.000	0.000	0.951

OBO Score Summary

	count	mean	std	min	25%	50%	75%	max
score	182.0	0.120929	0.199958	0.0	0.0	0.000	0.33925	0.799
score_dash	182.0	0.221121	0.360969	0.0	0.0	0.000	0.59300	0.989
score_impact	182.0	0.052549	0.132932	0.0	0.0	0.011	0.02700	0.951

OBO dependency graph